Variability decomposition plots — .eda_plot

This is an internal helper function used to generate plots that visualize the effects and residuals from the analysis of n-way tables or a regression model. The function is not intended for direct use by the end-user.

Usage

.eda_plot_vardecomp(
  dat,
  response,
  type = "boxpnt",
  input = "nway",
  eff = NULL,
  rotate = FALSE,
  padding = 0.1,
  show.resp = FALSE,
  outliers = TRUE,
  label = FALSE,
  order = TRUE,
  cex.txt = 1,
  lim = NULL,
  overlap = c("stack", "overplot", "jitter"),
  pch = 16,
  p.col = "grey50",
  p.fill = "grey80",
  size = 1,
  alpha = 0.5,
  grey = 0.6,
  title = "Variability decomposition",
  ...
)

Arguments

dat: A data frame in long form, containing the data to be plotted.
response: A character string specifying the name of the response variable column in the dat data frame.
type: A character string specifying the type of plot to generate. Must be either "boxpnt" or "box".
input: A character string. "reg" = bivariate model input. "nway" = univariate model or N-way table input.
eff: A list of effect values. Required when input = "nway".
rotate: Logical. If TRUE, rotates the plot orientation.
padding: Numeric. Controls padding for plot limits.
show.resp: Logical. If TRUE, includes a boxplot for the response variable.
outliers: Logical. If TRUE, outliers are displayed in boxplots.
label: Logical. Controls whether labels are displayed.
order: Logical. Controls ordering (likely of factors or effects).
cex.txt: Numeric. Controls text size.
lim: Numeric. Explicit limits for the plot axes.
overlap: Character. Specifies how to handle overlapping points, must be one of "stack", "overplot", or "jitter".
pch: Point symbol type. Only applicable if type = "boxpnt".
p.col: Point border color. Only applicable if type = "boxpnt".
p.fill: Point fill color. Only applicable if type = "boxpnt".
size: Point size. Only applicable if type = "boxpnt".
alpha: Transparency level for points (0 = transparent, 1 = opaque).
grey: Numeric. Controls grayscale coloring for plot elements and axes.
title: Plot title. If title is to be omitted, set to NULL.
...: Additional arguments passed to underlying plotting functions.

Value

Primarily called for producing a plot.